Publications of Birgit Möller

* Most recent items
* Journal articles, book chapters and peer-reviewed conference and workshop contributions
* Preprints
* Technical reports, poster presentations and other activities
* Theses

Most recent items

* Y. Poeschl, B. Möller, L. Müller, and K. Bürstenbinder,
''User-friendly assessment of pavement cell shape features with PaCeQuant: Novel functions and tools''.
In Methods in Cell Biology, Academic Press, 2020.
bib | DOI | http | Abstract ]
* B. Möller, H. Chen, T. Schmidt, A. Zieschank, R. Patzak, M. Türke, A. Weigelt, and S. Posch,
''rhizoTrak: A flexible open source Fiji plugin for user-friendly manual annotation of time-series images from minirhizotrons''.
In Plant and Soil, Sep 2019.
bib | DOI | http | Abstract | BioRxiv preprint ]

Journal articles, book chapters and peer-reviewed conference and workshop contributions

2019

* B. Möller, L. Zergiebel, and K. Bürstenbinder,
''Quantitative and Comparative Analysis of Global Patterns of (Microtubule) Cytoskeleton Organization with CytoskeletonAnalyzer2D''.
In F. Cvrčková and V. Žárský, editors, Plant Cell Morphogenesis: Methods and Protocols, chapter 10, pp. 151-171, Springer New York, New York, NY, 2019. [ bib | DOI | http | Abstract ]
* B. Möller, Y. Poeschl, S. Klemm, and K. Bürstenbinder,
''Morphological Analysis of Leaf Epidermis Pavement Cells with PaCeQuant''.
In F. Cvrčková and V. Žárský, editors, Plant Cell Morphogenesis: Methods and Protocols, chapter 22, pages 329-349, Springer New York, New York, NY, 2019. [ bib | DOI | http | Abstract ]
* B. Möller and K. Bürstenbinder,
''Semi-automatic Cell Segmentation from Noisy Image Data for Quantification of Microtubule Organization on Single Cell Level''.
In Proc. of IEEE 16th International Symposium on Biomedical Imaging (ISBI '19),
pp. 199-203, ISBN: 978-1-5386-3640-4, Venice, Italy, April 2019.
bib | DOI | http | Abstract ]
* B. Möller and M. Schattat,
''Quantification of Stromule Frequencies in Microscope Images of Plastids combining Ridge Detection and Geometric Criteria''.
In Proc. of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2019) - Volume 2: BIOIMAGING,
pp. 38-48, ISBN: 978-989-758-353-7, INSTICC, SciTePress, Prague, Czech Republic, February 2019.
bib | DOI | http | Abstract ]
* D. Mitra, S. Klemm, P. Kumari, J. Quegwer, B. Möller, Y. Poeschl, P. Pflug, G. Stamm, S. Abel, K. Bürstenbinder,
''Microtubule-associated protein IQ67 DOMAIN5 regulates morphogenesis of leaf pavement cells in Arabidopsis thaliana''.
In Journal of Experimental Botany, 70(2):529-543, January 2019.
bib | DOI | http | Abstract | bioRxiv ]

2017

* B. Möller, Y. Poeschl, R. Plötner, and K. Bürstenbinder,
''PaCeQuant: A Tool for High-Throughput Quantification of Pavement Cell Shape Characteristics''.
In Plant Physiology, 175(3):998-1017, November 2017.
bib | DOI | http | Abstract ]
* S. Posch and B. Möller,
''Alida - Advanced Library for Integrated Development of Data Analysis Applications''.
In Journal of Open Research Software, 5(1):7, 2017.
bib | DOI | http | Abstract ]
* K. Bürstenbinder, B. Möller, R. Plötner, G. Stamm, G. Hause, D. Mitra, and S. Abel,
''The IQD Family of Calmodulin-Binding Proteins Links Calcium Signaling to Microtubules, Membrane Subdomains, and the Nucleus''.
In Plant Physiology, 173(3):1692-1708, March 2017.
bib | DOI | http | Abstract ]

2016

* B. Möller, M. Glaß, D. Misiak, and S. Posch,
''MiToBo - a toolbox for image processing and analysis''.
In Journal of Open Research Software, 4(1):e17, 2016.
bib | DOI | http | Abstract ]
* S. Posch and B. Möller,
''Design and implementation of the Alida framework to ease the development of image analysis algorithms''.
In Pattern Recognition and Image Analysis, 26(1):181-189, 2016.
bib | DOI | http | Abstract ]

2015

* L. Franke, B. Storbeck, J. L. Erickson, D. Rödel, D. Schröter, B. Möller, and M. H. Schattat,
''The 'MTB Cell Counter' a versatile tool for the semi-automated quantification of sub-cellular phenotypes in fluorescence microscopy images. A case study on plastids, nuclei and peroxisomes''.
In Journal of Endocytobiosis and Cell Research, 26:31-42, 2015.
bib | http | Abstract ]
* S. Posch and B. Möller,
"Design and Implementation of the Alida Framework to Ease the Development of Image Analysis Algorithms".
In 9th Open German-Russian Workshop on Pattern Recognition and Image Understanding (OGRW '14),
D. Paulus, C. Fuchs, and D. Droege, editors, Workshop Chairs: Heinrich Niemann, Yuri Zhuravlev,
pages 75-81, University of Koblenz-Landau, Koblenz, Germany, 5/2015.
bib | Abstract ]
* N. Bley, M. Lederer, B. Pfalz, C. Reinke, T. Fuchs, M. Glaß, B. Möller, and S. Hüttelmaier,
''Stress granules are dispensable for mRNA stabilization during cellular stress''.
Nucleic Acids Research, 43(4):e26, February 2015. PubMed ID: 25488811, PubMed CID: PMC4344486.
bib | DOI | http | Abstract ]

2014

* B. Möller, E. Piltz and N. Bley,
"Quantification of Actin Structures using Unsupervised Pattern Analysis Techniques".
In Proc. of Int. Conf. on Pattern Recognition (ICPR '14), IEEE, pp. 3251-3256, Stockholm, Sweden, August 2014.
bib | DOI | http | Abstract ]
* D. Misiak, S. Posch, M. Lederer, C. Reinke, S. Hüttelmaier and B. Möller,
"Extraction of Protein Profiles from Primary Neurons using Active Contour Models and Wavelets".
In Journal of Neuroscience Methods , vol. 225, pages 1-12, March 2014.
bib |DOI | http| .pdf | Abstract ]

2013

* A. Elibol, S. Posch, A. Maurer, K. Pillen, and B. Möller,
"Vision-based 3D-Reconstruction of Barley Plants".
In Proc. of 6th Iberian Conference on Pattern Recognition and Image Analysis (IbPRIA '13),
vol. 7887 of Lecture Notes in Computer Science, Springer, pages 406-415, Madeira, Portugal, June 2013.
bib | .pdf | Abstract ]
* B. Möller and S. Posch,
"A Framework Unifying the Development of Image Analysis Algorithms and Associated User Interfaces".
In Proc. of 13th IAPR International Conference on Machine Vision Applications (MVA '13), pp. 447-450, Kyoto, Japan, May 2013.
bib | Abstract ]

2012

* M. Glaß, B. Möller and S. Posch,
"Scratch Assay Analysis in ImageJ".
In Proc. of ImageJ User & Developer Conference, pp. 211-214, ISBN 2-919941-18-6,
Mondorf-les-Bains, Luxembourg, October 2012.
bib | Abstract ]
* S. Kirchner, S. Posch and B. Möller,
"Graphical Programming in Alida and ImageJ 2.0 with Grappa".
In Proc. of ImageJ User & Developer Conference, pp. 138-143, ISBN 2-919941-18-6,
Mondorf-les-Bains, Luxembourg, October 2012.
bib | Abstract ]
* B. Möller and D. Misiak,
"SnakeOptimizer - Object Segmentation with Parametric Active Contours in ImageJ".
In Proc. of ImageJ User & Developer Conference, pp. 215-217/222, ISBN 2-919941-18-6,
Mondorf-les-Bains, Luxembourg, October 2012.
bib | Abstract ]
* S. Posch and B. Möller,
"Automatic Generation of Processing Histories using Alida".
In Proc. of ImageJ User & Developer Conference, pp. 218-221, ISBN 2-919941-18-6,
Mondorf-les-Bains, Luxembourg, October 2012.
bib | Abstract ]
This contribution was awarded the "Best Scientific Poster" of the ImageJ conference!
* M. Glaß, B. Möller, A. Zirkel, K. Wächter, S. Hüttelmaier and S. Posch,
"Cell Migration Analysis: Segmenting Scratch Assay Images with Level Sets and Support Vector Machines".
In Pattern Recognition, vol. 45, no. 9, pp. 3154-3165, Elsevier, September 2012.
bib | DOI | http | .pdf | Abstract ]
* B. Möller and S. Posch,
"Comparing Active Contours for the Segmentation of Biomedical Images".
In Proc. of IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI '12),
pp. 736-739, IEEEXplore Digital Library, IEEE Catalog No.: CFP12BIS-CDR, ISBN: 978-1-4577-1856-4, Barcelona, Spain, May 2012.
bib | http | Abstract ]

2011

* B. Möller and S. Posch,
"MiCA - Easy Cell Image Analysis with Normalized Snakes".
In Proc. of Workshop on Microscopic Image Analysis with Applications in Biology (MIAAB '11),
Heidelberg, Germany, September 2011.
bib | .html | .pdf | Abstract ]
* M. Glaß, B. Möller, A. Zirkel, K. Wächter, S. Hüttelmaier and S. Posch,
"Scratch Assay Analysis with Topology-preserving Level Sets and Texture Measures".
In Proc. of 5th Iberian Conference on Pattern Recognition and Image Analysis (IbPRIA '11),
Jordi Vitrià, João M. Sanches, and Mario Hernández, editors,
Springer, LNCS 6669, pp. 100-108, Las Palmas de Gran Canaria, Spain, June 2011.
bib | DOI | http | Abstract ]
* B. Möller, O. Greß and S. Posch,
"Knowing what happened - Automatic Documentation of Image Analysis Processes".
In Proc. of 8th International Conference on Computer Vision Systems (ICVS '11),
J.L. Crowley, B.A. Draper, and M. Thonnat (Eds.),
Springer, LNCS 6962, pp. 1-10. Inria Sophia Antipolis, France, September 2011.
bib | DOI | http | Abstract ]
* B. Möller, O. Greß, N. Stöhr, S. Hüttelmaier and S. Posch,
"Adaptive Segmentation of Particles and Cells for Fluorescent Microscope Imaging".
In VISIGRAPP 2010, Revised Selected Papers of Int. Joint Conf. on Computer Vision, Imaging and Computer Graphics. Theory and Applications,
P. Richard and J. Braz (Eds.), Communications in Computer and Information Science, vol. 229, pp. 154-169. Springer, Heidelberg (2011).
bib | DOI | http | Abstract ]

2010

* B. Möller, N. Stöhr, S. Hüttelmaier and S. Posch,
"Cascaded Segmentation of Grained Cell Tissue with Active Contour Models".
In Proc. of Int. Conf. on Pattern Recognition (ICPR '10), IEEE, pp. 1481-1484, Istanbul, Turkey, August 2010.
bib | http | Abstract ]
* B. Möller, O. Greß, N. Stöhr, S. Hüttelmaier and S. Posch,
"Adaptive Segmentation of Cells and Particles in Fluorescent Microscope Images".
In Proc. of Int. Conf. on Computer Vision Theory and Applications (VISAPP '10), vol. 2, pp. 97-106, Angers, France, May 2010.
bib | .pdf | Abstract ]
* O. Greß, B. Möller, N. Stöhr, S. Hüttelmaier and S. Posch,
"Scale-adaptive Wavelet-based Particle Detection in Microscopy Images".
In Proc. of Workshop Bildverarbeitung für die Medizin (BVM '10),
Hans-Peter Meinzer, Thomas Martin Deserno, Heinz Handels, and Thomas Tolxdorff, editors,
Springer, Informatik Aktuell, pp. 266-270, Aachen, Germany, March 2010.
bib | .html | Abstract ]

2009

* D. Misiak, S. Posch, N. Stöhr, S. Hüttelmaier and B. Möller,
"Automatic Analysis of Fluorescence Labeled Neurites in Microscope Images".
In Proc. of IEEE Workshop on Applications of Computer Vision (WACV '09), IEEE Winter Vision Meetings,
pp. 118-124, IEEEXplore Digital Library, ISBN: 978-1-4244-5496-9, IEEE Catalog Number: CFP09082-CDR, Snowbird, Utah, USA, December 2009.
bib | http | Abstract ]
* B. Möller and S. Posch,
"Robust Features for 2-D Electrophoresis Gel Image Registration".
In Electrophoresis, vol. 30, no. 23, pp. 4137-4148, Wiley-VCH, Weinheim, 2009.
bib | DOI | http | .pdf | Abstract ]

2008

* B. Möller, T. Plötz and G. Fink,
"Calibration-free Camera Hand-Over for Fast and Reliable Person Tracking in Multi-Camera Setups".
In Proc. of Int. Conf. on Pattern Recognition (ICPR '08), IEEE, pp. 1-4, Tampa Convention Center, Tampa, Florida, USA, December 2008.
bib | http | .pdf | Abstract ]
* A. Elibol, B. Möller and R. Garcia,
"Perspectives of Auto-Correcting Lens Distortions in Mosaic-Based Underwater Navigation".
In Proc. of 23rd IEEE Int. Symposium on Computer and Information Sciences (ISCIS '08), pp. 1-6, Istanbul, Turkey, October 2008.
bib | http | .pdf | Abstract ]
* B. Möller, O. Greß and S. Posch,
"A Comparative Study of Robust Feature Detectors for 2D Electrophoresis Gel Image Registration".
In Proc. of German Conference on Bioinformatics (GCB '08), LNI P-136, pp. 138-147, Dresden, Germany, September 2008.
bib | .html | Abstract ]
* B. Möller and S. Posch,
"An Integrated Analysis Concept for Errors in Image Registration".
In Int. Journal on Pattern Recognition and Image Analysis (PRIA), vol. 18, no. 2, pp. 201-206, Springer, June 2008.
bib | DOI | http | .pdf | Abstract ]

2007

* B. Möller and S. Posch,
"Identifying Lens Distortions in Image Registration by Learning from Examples".
In Proc. of British Machine Vision Conference (BMVC '07), pp. 152-161, vol. I, University of Warwick, Coventry, UK, September 2007.
bib | .pdf | Abstract ]
* B. Möller and S. Posch,
"An Integrated Analysis Concept for Errors in Image Registration".
In Proc. of 7th Open German/Russian Workshop on Pattern Recognition
and Image Understanding (OGRW '07), Extended Abstracts
, Ettlingen, Germany, August 2007.
(the full version of this paper appeared in: PRIA, 2008 - see above)
bib | Abstract ]
* B. Möller, R. Garcia and S. Posch,
"Towards Objective Quality Assessment of Image Registration Results".
In Proc. of Int. Conf. on Computer Vision Theory and Applications (VISAPP '07), pp. 233-240, Barcelona, Spain, March 2007.
bib | .pdf | Abstract ]
* B. Möller and S. Posch,
"Automatic Analysis of Lens Distortions in Image Registration".
In Workshop on Camera Calibration Methods for Computer Vision Systems (CCMVS '07),
Int. Conf. on Computer Vision Systems (ICVS '07)
, Bielefeld, Germany, March 2007.
bib | DOI | http | .pdf | Abstract ]

2006

* B. Möller and S. Posch,
"A Space- and Time-Efficient Mosaic-Based Iconic Memory for Interactive Systems".
In Proc. of Int. Conf. on Computer Vision Theory and Applications (VISAPP '06), pp. 413-421, Setúbal, Portugal, February 2006.
bib | .pdf | Abstract ]

2005

* B. Möller, S. Posch, A. Haasch, J. Fritsch and G. Sagerer,
"Interactive Object Learning for Robot Companions using Mosaic Images".
In Proc. of IEEE/RSJ Int. Conf. on Intelligent Robots and Systems (IROS '05), pp. 371-376, Edmonton, Alberta, Canada, August 2005.
bib | .pdf | Abstract ]
* B. Möller and S. Posch,
"A Mosaic-based Visual Memory with Applications to Active Scene Exploration".
In Proc. of Int. Conf. Mirage, Computer Vision / Computer Graphics Collaboration Techniques and Applications,
pp. 117-125, INRIA Rocquencourt, France, March 2005.
bib | .pdf | Abstract ]
* B. Möller and S. Posch,
"Visual Scene Memory Based on Multi-Mosaics".
In Mixed-reality as a challenge to image understanding and artificial intelligence,
D. Paulus and D. Droege, editors, pp. 27-32, Universität Koblenz-Landau, Institut für Informatik.
Koblenz, Germany, September 2005.
bib | Abstract ]

2004

* B. Möller, D. Williams and S. Posch,
"Towards a Mosaic-based Visual Representation of Large Scenes".
In Int. Journal on Pattern Recognition and Image Analysis (PRIA), vol. 14, no. 2, pp. 262-266, 2004.
bib | Abstract ]

2003

* B. Möller, D. Williams and S. Posch,
"Robust Image Sequence Mosaicing".
In Pattern Recognition, Proc. of 25th DAGM Symposium, Springer, LNCS 2781, pp. 386-393,
Magdeburg, Germany, September 2003.
bib | http | .pdf | Abstract ]
* B. Möller, D. Williams and S. Posch,
"Towards a Mosaic-based Visual Representation of Large Scenes".
In Proc. of 6th Open German/Russian Workshop (OGRW '03), Extended Abstracts, pp. 108-111,
Katun Village, Altai Region, Russian Federation, August 2003.
(the full version of this paper appeared in: PRIA, 2004 - see above)
bib | Abstract ]
* D. Williams, B. Möller and S. Posch,
"Integrated System for a Visual Memory based on Mosaics".
In Proc. of Int. Conf. on Imaging Science, Systems, and Technology (CISST'03), pp. 633-639,
Monte Carlo Resort, Las Vegas, Nevada, USA, June 2003.
bib | Abstract ]

2002

* B. Möller and S. Posch,
"Analysis of Object Interactions in Dynamic Scenes".
In Pattern Recognition, Proc. of 24th DAGM Symposium, Springer, LNCS 2449, pp. 361-369,
Zurich, Switzerland, September 2002.
bib | http | .pdf | Abstract ]

2001

* B. Möller and S. Posch,
"Detection and Tracking of Moving Objects for Mosaic Image Generation".
In Pattern Recognition, Proc. of 23rd DAGM Symposium, Springer, LNCS 2191, pp. 208-215,
Munich, Germany, September 2001.
bib | http | .pdf Abstract ]

Preprints

2019

* B. Möller, H. Chen, T. Schmidt, A. Zieschank, R. Patzak, M. Türke, A. Weigelt and S. Posch,
''rhizoTrak: A flexible open source Fiji plugin for user-friendly manual annotation of time-series images from minirhizotrons''.
BioRxiv preprint 547604, DOI: https://doi.org/10.1101/547604, February 2019.
bioRxiv ]

Technical reports, poster presentations and other activities

* B. Schreck, B. Möller, N. Eisenhauer, R. Patzak, T. Schmidt, M. Türke, A. Weigelt, A. Zieschank, S. Posch, and H. Chen,
''rhizoTrak: A new, user-friendly tool for root annotation from minirhizotron images''.
Poster Presentation at iDiv Annual Conference 2018, German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig,
Leipzig, Germany, 11./12. December 2018.
* B. Möller, Y. Poeschl, and K. Bürstenbinder,
''Analysis of Cell Morphology with the ImageJ Plugin PaCeQuant''.
Poster Presentation at EMBL Conference: From Images to Knowledge with ImageJ & Friends, EMBL Heidelberg, Germany, December 2018.
bib | Abstract ]
* B. Möller, H. Chen, T. Schmidt, A. Zieschank, R. Patzak, B. Schreck, M. Türke, A. Weigelt, and S. Posch,
''Minirhizotron Image Annotation in Fiji with rhizoTrak''.
Poster Presentation at EMBL Conference: From Images to Knowledge with ImageJ & Friends, EMBL Heidelberg, Germany, December 2018.
bib | Abstract ]
* T. Schmidt, A. Zieschank, A. Lange, G. Mathias, B. Möller, L. Mommer, R. Patzak, J. van Ruijven, M. Türke, A. Weigelt, and S. Posch,
''rhizoTrak: Annotation of Root Images from Minirhizotrons.
Poster Presentation at iDiv Annual Conference 2017, German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig,
Leipzig, Germany, 19./20. December 2017.
* S. Posch and B. Möller,
"Alida - Automatic Generation of User Interfaces for Data Analysis Algorithms".
Poster presentation at IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI),
Bioimage Analysis Workshop
, Barcelona, Spain, April 2012.
bib | Abstract ]
* D. Misiak, S. Posch, N. Stöhr, S. Hüttelmaier and B. Möller,
"Automatic Detection of Fluorescence Labeled Neurites in Microscope Images".
Poster Presentation at German Conf. on Bioinformatics (GCB '09), Halle (Saale), Germany, September 2009.
bib ]
* B. Möller and S. Posch,
"An Iconic Scene Memory Approach for Mobile Robots Interacting with Humans".
Technical Report, Institute of Computer Science, Martin-Luther-University Halle-Wittenberg, Germany, TR-2007/03, December 2007.
bib | .pdf | Abstract ]

Theses

2005 - PhD Thesis

* B. Möller,
"Multi-Mosaikbilder - Ein Ansatz zur ikonischen Repräsentation von Bilddaten aktiver Kameras".
PhD Thesis, Institute of Computer Science, Martin-Luther-University Halle-Wittenberg,
Germany, July 2005.   (some example images and results can be found here)
bib | http | .pdf | Abstract ]

2001 - Diploma Thesis

* B. Möller, "Detektion von Bewegung bei der Berechnung von Mosaikbildern".
Diploma Thesis, Applied Computer Science, Faculty of Technology, University of Bielefeld, March 2001.
bib | http | .pdf ]